解剖学报 ›› 2025, Vol. 56 ›› Issue (1): 37-42.doi: 10.16098/j.issn.0529-1356.2025.01.005

• 肿瘤学专栏 • 上一篇    下一篇

基于网络药理学和分子对接技术探究岩大戟内酯B治疗胃癌的作用机制

张昊 李玲敏 武楠 王宁宁 李雪岩 简白羽*   

  1. 齐齐哈尔医学院多基因病研究所,黑龙江 齐齐哈尔161006
  • 收稿日期:2024-07-01 修回日期:2024-11-09 出版日期:2025-02-06 发布日期:2025-02-06
  • 通讯作者: 简白羽 E-mail:jianbaiyu@qmu.edu.cn
  • 基金资助:
    黑龙江省自然科学基金优秀青年项目;国家自然科学基金项目

Exploring the mechanism of jolkinolide B in gastric cancer treatment based on network pharmacology and molecular docking approach

ZHANG Hao LI Ling-min WU Nan WANG Ning-ning LI Xue-yan JIAN Bai-yu*   

  1. Institute of Polygenic Disease, Qiqihar Medical University, Heilongjiang Qiqihar 161006, China
  • Received:2024-07-01 Revised:2024-11-09 Online:2025-02-06 Published:2025-02-06
  • Contact: JIAN Bai-yu E-mail:jianbaiyu@qmu.edu.cn

摘要:

目的 利用网络药理学结合分子对接技术探讨岩大戟内酯B治疗胃癌的作用机制。方法  利用SwissTargetPrediction 数据库预测岩大戟内酯B潜在作用靶点;搜索Genecards、OMIM、Drugbank、TTD和PharmGKB数据库获取胃癌的疾病靶点;取岩大戟内酯B靶点和胃癌疾病靶点的交集,得到岩大戟内酯B治疗胃癌的潜在靶点,基于R 4.4.0软件使用Bioconductor 生物信息软件包对交集靶点进行基因本体论(GO)功能富集分析和京都基因与基因组百科全书(KEGG)通路富集分析,得到岩大戟内酯B治疗胃癌的重要调节通路。运用String 数据库对共同靶点构建蛋白相互作用网络,采用Cytoscape 3.7.1软件构建“岩大戟内酯B治疗胃癌潜在靶点”的核心网络,利用SYBYL-X2.1.1软件将筛选得到的主要活性成分和关键靶点进行分子对接验证。结果  岩大戟内酯B可能作用于MAPK1、糖原合成激酶3β(GSK-3β)和JUN等多个靶点,影响胃癌的增殖、侵袭和转移过程,抑制胃癌的生长。结论  我们预测了岩大戟内酯B治疗胃癌的可能分子机制, 为后续实验研究及临床应用提供信息。


关键词: 岩大戟内酯B, 胃癌, 网络药理学, 分子对接, 基因富集分析

Abstract:

Objective To explore the mechanism of action of jolkinolide B in the treatment of gastric cancer by network pharmacology combined with molecular docking technique.   Methods The SwissTargetPrediction database was used to obtain the targets of the active compounds. Search Genecards, OMIM, Drugbank, TTD, and PharmGKB databases to obtain targets for gastric cancer. The intersection between the targets of jolkinolide B and those of gastric cancer was identified pinpoint potential targets for jolkinolide B in treating gastric cancer. The String database was utilized construct a protein-protein interaction(PPI) network. Bioconductor bioinformatics packages with R software was employed conduct Gene Ontology (GO) functional enrichment analysis and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis on the shared targets. This process revealed significant regulatory pathways crucial for jolkinolide B’s efficacy in treating gastric cancer. Cytoscape 3.7.1 software was utilized create the core network of “Potential Targets of Triptolide B in Gastric Cancer Treatment”, and SYBYL-X2.1.1 software was employed conduct molecular docking validation of the selected main active ingredients and critical targets.   Results Jolkinolide B may target multiple proteins, including MAPK1, glycogen synthase kinae-3β(GSK-3β), and JUN, impacting the proliferation, invasion, and metastasis of gastric cancer, ultimately inhibiting its growth.     ConclusionWe predicted the possible molecular mechanism of jolkinolide B in the treatment of gastric cancer to provide guide information for the subsequent experimental research and clinical application.

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